Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKDILNALYHQKDLNDEEVKKLFTLIIDEKVSPAQLGAVLCALKIKGESFKEISVAATTLLEHA-PKPFNS-GLDLIDNCGTGGDGLKTINISTIAALIASSMGLSMAKHGSRSVSSHSGSADLLENLGVNIEMNPMQLENCFKQSHFGFLFAPLYHQSFKKSAPLRKELFTKTIFNCLGPLINPLRPKIQLLGVYDKSLCKTMALALKALGVKRA--MVVNG-GGTDEIVLHDITHACELKNNEILEYDLSAKDFDLPPYDLKELQIENAKESVQACLDILEN-KG--KDSHTMVVAANVASLLYLSHRAKDL---KEGVSMTLEHLKTKAPYAHLQKIIRLSHA |
| 4N93 Chain:A ((30-368)) | ---ILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAHPLPADTVPDDAVDVVGTGGDGVNTVNLSTMAAIVVAAAGVPVVKHGNRAASSLSGGADTLEALGVRIDLGPDLVARSLAEVGIGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPLTNPARPRAGLIGCAFADLAEVMAGVFAA---RRSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPAGFGFARAQLDQLAGGDAQANAAAVRAVLGGARGPVRDAVVLNAAGAIVAHAGLSS-AEWLPAWEEGLRRASAAIDTGAAEQLLARWVRFGRQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4N93.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -193376 for 2944 contacts (-65.7/contact) +
2D Compatibility (PS) -34897 + (NN) -20276 + (LL) 492
1D Compatibility (HY) -14800 + (ID) 5200
Total energy: -268057.0 ( -91.05 by residue)
QMean score : 0.519
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