Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSIRRGDGLNVVPFIDIMLVLLAIVLSISTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVDEHDNIFVDDKPTNLEALSAVVKQTDPKTLIDLKSDKSSRFETFISIMDILKEHNHENFSISTQAQ
1NMC Chain:N ((266-320))
-------NGVKGFSYLDGVNTWLGRTISIASRSGYEMLKV--PNALTDDKSKPTQGQTIVLNTDWSGYSGSFMDYWAEGECYRACFYVELIRGRPKEDKVWWTSNSIVSMCSSTEFLGQWDWPDGAKIE
General information:
TITO was launched using:
RESULT:
Template:
1NMC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14660 for 290 contacts (-50.6/contact) +
2D Compatibility (PS) -5782 + (NN) -18 + (LL) 624
1D Compatibility (HY) -1600 + (ID) 750
Total energy: -22186.0 ( -76.50 by residue)
QMean score : 0.110
(partial model without unconserved sides chains):
PDB file :
Tito_1NMC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NMC-query.scw
PDB file :
Tito_Scwrl_1NMC.pdb
: