Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKPIKTYDIKEEELAKTAYATIKTNKGNITLELFYKDAPQAVSNFVTLA--KEGF-YNGLNFHRVIAGFVAQGG-CPYGTGTGG--------PEHRIKCEVAHNPNKHQRGSISMAHAGRDTGGSQFFLCFVDLPHLDGEHTVFGKITSAESLSVLDKIKQGDIIESVVFSPSL
1CYN Chain:A ((20-145))
--------------------------GRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLK-HYGP-----GWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKV--LEGMEVVRKVESTKTDSRDKPLKDV
General information:
TITO was launched using:
RESULT:
Template:
1CYN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64319 for 801 contacts (-80.3/contact) +
2D Compatibility (PS) -12198 + (NN) -6148 + (LL) 2684
1D Compatibility (HY) -10400 + (ID) 2800
Total energy: -93181.0 ( -116.33 by residue)
QMean score : 0.468
(partial model without unconserved sides chains):
PDB file :
Tito_1CYN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CYN-query.scw
PDB file :
Tito_Scwrl_1CYN.pdb
: