Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKSLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDEKLSLETTLSPNRPTIPRNTQIVFSSKELKEPHSNPIPSLNAPMQKPQNKPSSSQQSPQNFSYPESKLGSKNSKNSLLQPLVTPSKVSPTNEVKTPTNDANPPLKHSSQDQENNLFVAPPTEKTLPNNTSSADASENNESNENRDNVEKQAIRDPNIKEFACGKWVYDDENLQAYRPSILKRVDKDKEITTDITPCDYSTAENK----SGKIITPYTKISVHKTEPLEDPQTFEAKNNFAILQARSSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQVEPTFYETSELA----YSSTRKSEITRNELNLNEKFMEFVEVYEGHYLNDIIKE-SSEYKEWVKNHVRFKEGVCMALEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV |
| 3GPD Chain:R ((1-334)) | GKVKVGVDGF----GRIGRLVTRAAFNSGKV-----------------DIVAIND------PFIDLHYMVYMFQYDSTHGKFHGTVKAE--------DGKLVIDGKAITIFQE---------------------RDPENIKWGDAG----------------TAYVVESTGVFTTMEKAGAHLKGGAK----RIVISAPSADAP-MFVMGV--------------------------------------NHFKYANS-LKIISNASCTTNCLAPLAKVIHDH-FGIVEGLMTTVHAITATQKTVDSPSGKLWRGGRGAAQNLIPASTGAAKAVGKVIPELDGKLTGMAFRVPTANVSVLDLTCRL-----EKPAKYDDIKKVVKEASEGPLKGILGYTEDEVVSD-DFN-GSNHSSIFDAGAGIEL----NDTFVKLVSWYDNEFGYSERVVDLMAHMASKE-------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GPD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 101970 for 2855 contacts (35.7/contact) +
2D Compatibility (PS) -33166 + (NN) 2577 + (LL) 6420
1D Compatibility (HY) -7200 + (ID) 2500
Total energy: 68101.0 ( 23.85 by residue)
QMean score : 0.090
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