Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKPTMMTYINEEEEMCRAILANFQTNAEKLESLVKNGAKEWLILATGSSLNAAQSAKYYIENIADVRITVEEPFNHLYYEKLSNHLDLVIGISQSGQSTSTISALERVKKEASVPVVALTSDVTSEIAEFADITLDIGSGKERVGYVTKGFTATVLTLMLTGLHFAYKTAQIDETKFNNEINAFSRATNAIPATIAETEAFYERWQE---EFATAPKFTAIGYGPTVGTCKEFETKFSETVRVPSQGLDLEAFMHGPYLEVNPQHRIFFL--------ETESAVTE------RLVALRNYESKYTPFTYTVKFGTAGNDRTLLIPADLDEYQAPFLMILPFQILAHHIAELKGNKLTERIYTDFGVAMKSKTKPGDYA |
2V4M Chain:A ((61-360)) | -------------------------------------CRRLILIACGTSYHAGVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFFLSQSGETADTLMGL-RYCKERGALTVGITNTVGSSISRETDCGVHINAGPEIGVASTKAYTSQFVSLVMFALMMCDDRISMQERR-----KEIMLGLKRLPDLIKEVLSMDDEIQKLATELYHQKSVLIMGRGYHYATCLEGALKIKEITYMHSEGILAGELKHGPLALVDKLMPVIMIIMRDHTYAKCQNALQQVVARQGRPVVICDKED-----TETIK----NTKRTIKVPHSVDCLQG-ILSVIPLQLLAFHLAVLRG------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2V4M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -146115 for 2407 contacts (-60.7/contact) +
2D Compatibility (PS) -29598 + (NN) -3175 + (LL) 5060
1D Compatibility (HY) -18800 + (ID) 3600
Total energy: -196228.0 ( -81.52 by residue)
QMean score : 0.458
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