Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LEKKKKFRLFDAVLMAVCVVLVVESAAPAA----AIGSSQFFWWIALLILFFLPYGLVSAELGTTYDDEGGIYDWVKRAFGRKW-GARVAWLYWINYPIWMASLAVLFVEVITQIFPVSFGTPVSILIQLIFVWIVVIVSCYPVSDSKWILNIAAFCKVAIML-CLGVLGIYFAITKGLANDFSGKALLPTFDLESLSFISVILFNFLGFEVVTTLASDMENPKKQIPQAIIYGGILIAFFYLLAAFGMGAAIPTSELST--SGGLIDSFIMLIGGVNPFVIIIGIMFMYTLVANLVSWALGVNYVAMYAAKNKDLPAVFGKTNPKNDMPTGTSILNGIVASVLIVAAPLIPNENIFWAFFALNVVALLGSYILMFPAFLKLRKLDPDRERPFKVPGGKILLYLMTFVPMILLIITLIFSAVPLNGSSAELNEKIPILIGTIVAVIVGEICIWLAGKRKDKGEIKNEND |
3GIA Chain:A ((3-370)) | -LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRNLPETFILSGIY-ALLVAYSYTKLGAKIVSNAGPIAFIHKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIF-AGLITI--HPS--YVIP-DLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPF-LG-NLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKV-WFKST-EGLYITSALGVLFALLFN-------MEGVASITSAVFMVIYLFVILSHYILIDEVG---------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GIA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -400787 for 3247 contacts (-123.4/contact) +
2D Compatibility (PS) -37135 + (NN) -12504 + (LL) 7828
1D Compatibility (HY) -22800 + (ID) 3300
Total energy: -468698.0 ( -144.35 by residue)
QMean score : 0.378
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