Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LAKNTHMNVTVDFTNWGASKYDLR-IPVHQPIKALIINLAETLKIDYKDLSKCTIKTT---NKAILLSDDDKLTNFQIADGDILEIL
1V5T Chain:A ((5-79))
---SSGLPIIVKWG---GQEYSVTTLSEDDTVLDLKQFLKTLTGVL-----PERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMM-
General information:
TITO was launched using:
RESULT:
Template:
1V5T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39913 for 440 contacts (-90.7/contact) +
2D Compatibility (PS) -7300 + (NN) -1339 + (LL) 692
1D Compatibility (HY) -2400 + (ID) 450
Total energy: -50710.0 ( -115.25 by residue)
QMean score : 0.514
(partial model without unconserved sides chains):
PDB file :
Tito_1V5T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V5T-query.scw
PDB file :
Tito_Scwrl_1V5T.pdb
: