Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LYEKLVNKYQDEVTIREEKMPYKLPGLYLNGMIFISKDQSSIEKGCVLVEELMHYKYTVGNITKQETIMDKKQEIFARRKGYEELIPLDDIIACFYLGLREYFEVAEFLEVTEEFLRHTVSHY-----AEKYGPMYDYGGYFINFGNSIDVYKKF
4I1P Chain:A ((25-86))
--------------------------------------------------------------------------------------PLVDVYELTNLLRQLDFKVVSLLDLTEYEMRNAVDEFLLLLDKGVYGLLYYAGHGYENFGNS-------
General information:
TITO was launched using:
RESULT:
Template:
4I1P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20108 for 248 contacts (-81.1/contact) +
2D Compatibility (PS) -5881 + (NN) -1206 + (LL) 7800
1D Compatibility (HY) -4000 + (ID) 1000
Total energy: -24395.0 ( -98.37 by residue)
QMean score : 0.043
(partial model without unconserved sides chains):
PDB file :
Tito_4I1P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4I1P-query.scw
PDB file :
Tito_Scwrl_4I1P.pdb
: