Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSDLFLELNGKVHSLSETFPGLSVQEVSRQSPQLSMETAEIAGTDGVIPGMTQFKPFIFSAKCNLQAL-DIPDYHLAVREIYEFLFQRDSYYIWSDQMPGIRYEVHPKPVDFSRESDRVGLLTIEFDVFKGYAESRGTSLDPMTFEVDLWQMGMNLSNRDDLFYIFKENTFRVYNAGSDRVNPLMRHELDIAMTANGTPTIHNLTTGESFEYQKELRKTDVLLL----NNIYPLVNNRRVGKDTNHGIITLEKGWNDFEIKGVTDVTIAFNFPFIYR |
2X8K Chain:A ((9-253)) | -KVFTMMYDG--QDLTDYFLVQEVRG--RSVYSIEMGKRTIAGVDGGVITTESLPARELEVDAIVFGDGTETDLRRRIEYLNFLLHRDTDVPITFSDEPSRTYYGR---YEFATEGDGFHKVTLNFYCQDPLKYGPEVTTDVTT------------------------ASTPVKNTGLAVTNPTIRCVFSTSATEYEMQLLDGSTVVKFLKVVYGFNTGDTLVIDCHERSVTLNGQDIMPALLIQSDWIQLKPQVNTYLKAT-QPSTIVFTEKFL-- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2X8K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -54439 for 1590 contacts (-34.2/contact) +
2D Compatibility (PS) -25042 + (NN) 503 + (LL) 2684
1D Compatibility (HY) -5200 + (ID) 2000
Total energy: -83494.0 ( -52.51 by residue)
QMean score : 0.215
|
|
|