Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDYVIIQSMDKEVEEILTDIDYGSFSYDYEKNTSRAISFT-VNKTKQNAAIFDLVGNEAILTYQGQQFVIKKCTPKSIGGTLSK-----QITAQHICYTVQDHVQYNVKSGRKKYSIQTVLEFALQDNVLGFSYEIQGSFPLVELEDLG---NKNGLELVNLCLEEFGAILFADNKKLYFYDEKSWYVKTEKQFRYLYNTEEVSVDTNTDNLKT-----------EIKCYGKQKENADK-LTGDNKYMAVVTYTSPNEAIYGKRMANAKSDDKITN---NDDLLIFAKKQILDVPETALTISYKGKEPVSERDVWYFIHEPMGFETEVKVTKIKSSHPWSKKFQEIGFSNSRRDM-------VRIQTQIANQVKKASVDTNKINSFSSIAMNAYDSRILTEVVGVVDGD-------------------------------- |
| 4QIQ Chain:A ((7-470)) | -SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTD-GWRYMFASECIPALLFLMLLYTVPESPRWLMTLATQAVQEIKHSLDRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4QIQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 102954 for 2896 contacts (35.6/contact) +
2D Compatibility (PS) -38642 + (NN) -3905 + (LL) 272
1D Compatibility (HY) -20000 + (ID) 2200
Total energy: 38479.0 ( 13.29 by residue)
QMean score : 0.004
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