Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDAKSQQAEAQLQLLKKEQSAAKDFLQDLQRQQNEQEWLAEDVARVHQEER-------ESLELLREVWQGAESRSFGYYLADLQEEEKQKWHKKIQANEEECQQKITACRKNIYQLENQQQDLQKELLQ
4AFY Chain:B ((195-258))
-----------VQFIKIDGS----FVQDLNQVEN-QEILKGLIAELHEQQKLSIVPFVESASVLATLWQAGATYIQGYYL-------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4AFY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2400 for 318 contacts (7.5/contact) +
2D Compatibility (PS) -6035 + (NN) -1391 + (LL) 6132
1D Compatibility (HY) -6000 + (ID) 1100
Total energy: -5994.0 ( -18.85 by residue)
QMean score : 0.437
(partial model without unconserved sides chains):
PDB file :
Tito_4AFY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AFY-query.scw
PDB file :
Tito_Scwrl_4AFY.pdb
: