Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYKIIAIDIDGTLLNDTHEITPAVRDSIKAAKAKGVKVVLCTGRPLAGIKKSLIELDLLDEGDYAITFNGAVVLETASEKTLADITLNKTELEEIYAFCHAENVNVT-YFDGKNMYVPSRKITEITCQDSLLLGTPLYHLPVEEAPESIHVSKVML-LDSPEKITDVIKKLPENIKEKFYVVRSVPYNLEFLQKGVNKGSALASLADKLGVDQSEVMSIGDQENDITMIEYAGMGVAMGNATEHIKEIAN--YTTTTNNEDGVAQAIQMLILDR
3PGV Chain:A ((21-284))
-YQVVASDLDGTLLSPDHFLTPYAKETLKLLTARGINFVFATGRHYIDVGQIRDNLGIR---SYMITSNGARVHDSDGQQIFAH-NLDRDIAADLFEIVRNDPKIVTNVYREDEWYMNRHR-----FFKEAVFNYKLYE-PGELDPQGI--SKVFFTCEDHEHLLPLEQAMNARWGDRVNVSFSTLTCLEVMAGGVSKGHALEAVAKMLGYTLSDCIAFGDGMNDAEMLSMAGKGCIMANAHQRLKDLHPELEVIGSNADDAVPRYLRKLYL--
General information:
TITO was launched using:
RESULT:
Template:
3PGV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126504 for 2152 contacts (-58.8/contact) +
2D Compatibility (PS) -28334 + (NN) -12619 + (LL) 1320
1D Compatibility (HY) -19200 + (ID) 3600
Total energy: -188937.0 ( -87.80 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_3PGV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PGV-query.scw
PDB file :
Tito_Scwrl_3PGV.pdb
: