Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LYKNYLQRTLVLLLCFILYFFTFPLGGKAYSLNNWNKPIKNSVTTKQWMSALPDTTNLAALSIPGTHDTMSYNGDITWTLTKPL----AQTQTMSLYQQLEAGIRYIDIRAK---DNL-NIYHGPIFLNASLSGVLETITQFLKKNPKETIIMRLKDEQNSNDSFDYRIQPLINIYKDYFYTTPRTDT-----SNKIPTLKDVRGKILLLSE-NHTKKPLVINSRKFGMQF------------GAPNQVIQDDYNGPSVK--TKFKEIVQTAYQASKADNKL--FLNHISATSLTFTPRQYAAALNNKVEQFVLNLTSEKVRGLGILIMDFPEKQTIKNIIKNNKFN |
4I90 Chain:A ((5-282)) | -----------------------------------------SKSPENWMSKLDDGKHLTEINIPGSHDSGSF------TLKDPVKSVWAKTQDKDYLTQMKSGVRFFDIRGRASADNMISVHHGMVYLHHELGKFLDDAKYYLSAYPNETIVMSMKKDYDSDSKV---TKTFEEIFREYYYNNPQYQNLFYTGSNANPTLKETKGKIVLFNRMGGTYIKSGYGADTSGIQWADNATFETKINNGSLNLKVQDEYKDYYDKKVEAVKNLLAKAKTDSNKDNVYVNFLSVASGGSAFNSTYYYASYINPEIAKTI--KANGKAR-TGWLIVDY---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4I90.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -86146 for 1889 contacts (-45.6/contact) +
2D Compatibility (PS) -26111 + (NN) -7759 + (LL) 3904
1D Compatibility (HY) -16000 + (ID) 4050
Total energy: -136162.0 ( -72.08 by residue)
QMean score : 0.531
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