Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKSKLICIIMVIAFQAHFTMTVKADSVGEEKLQNNTQAKKTPADLKALPDSCEAKDFYKNFKILDMTKDKLGVTHYTLALSSGGYLTDNDEIKVHVTPDNKITFINGDLQQGQLRITNQIKITEKNAIEKAFEAIGQSEAHVKSYVGNPVKEKEIILNSRTKRLVYNIKLIFAEPEVASWIVQVDVETGAILKKQNMLSEVERADTHKDFQALGKGANRLLQRPLHVMKINDLFYLVDRTHKGLIRTFDLKHNTDTSFGKVVSNKTNMFTDPEFSSAVDAHFYASEVYEYYKNVHQLESLDGKGGEIDSFVHYGLNCNNAFWDGQEILYGDGDKKNFKPFSCAKTIVGHELTHAVIQYSAGLEYEGQSGALNESFADVFGYFIA------PNHWLIGEDVCVRGSRDGRIRSIKDPDKYNQAAHMKDYESLPLTEEGDWGGVHYNSGIPNKAAY----------NTITKLGKEKTEQLYFRALKYYLTKKSQFTDAKKALQQAAKDLYGEDASK--KVAEAWEAVGVN |
1LND Chain:E ((28-315)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YYLQDNTRGDGIFTYDAKYRT-TLPGSLWADADNQFFASYDAPAVDAHYYAGVTYDYYKNVHNRLSYDGNNAAIRSSVHYSQGYNNAFWNGSEMVYGDGDGQTFIPLSGGIDVVAHELTHAVTDYTAGLIYQNESGAINEAISDIFGTLVEFYANKNPD-WEIGEDVYTPGISGDSLRSMSDPAKYGDPDHY----SKRYTGTQDNGGVHINSGIINKAAYLISQGGTHYGVSVVGIGRDKLGKIFYRALTQYLTPTSNFSQLRAAAVQSATDLYGSTSQEVASVKQAFDAVGV- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LND.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -90227 for 2347 contacts (-38.4/contact) +
2D Compatibility (PS) -28903 + (NN) -9451 + (LL) 17720
1D Compatibility (HY) -19600 + (ID) 6250
Total energy: -136711.0 ( -58.25 by residue)
QMean score : 0.497
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