Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------------------------VSERSMKRLMKGAA-----------WLTAASLISKILSAIYR---VPFQNMVGDVGFYIFQQVYPIYGIAMTLALGGFPVVI------------SKMLAEAEGDVRRQQIIMRAVSRMLRIVSIVIFAFLFLFANLIAIMMGDPALSELIRVISFV--------FLLMPQ--------------------------LAFMRGFFQGEGDMIPTAISQTVEQIIRVAIILIGAGLALHFNFDLYDAGSM---AMSGAFFG------------GVSGIFILRHFYN--KKVRLGEGI---QPAVFTN--KEEKVGIGRTFLRQSVAICVVSSMLILFQLVDSFQVYRL--MSDSGIPDFIAKSLKGVYDRGQPILQLGLVISTGLALALVPMI----TAARVQG--QQKELKR----------SVLLAIKITLILSGAE-TIGLIVIMRPLNQMLFQTPDGTFVLQLFMPAVFLSSLI--------IMLSSILQGFGKIAVPAVGVGIGLIVKWVTGGILIPRLATVGASVSTCVGLLVILLICYVSLKQTIRVPFVEKTMLFRLVAALVLMAVF--PCLFEWLAPLDTRLGSAFQAIVSALVGGGI----------------------------------FLVFALRYKLLGPKDFVFLPFGSKLLALSKLVARK-- |
| 3W5F Chain:A ((3-708)) | EAEFSVSYDDRAIIINGKRKILISGSIHYPRSTPQMWPDLIQKAKDGGLDVIETYVFWNGHEPSPGKYNFEGRYDLVRFIKMVQRAGLYVNLRIGPY--VCAEWNFGGFPVWLKYVPGMEFRTNNQPFKVAMQGFVQKIVNMMKSENLFESQGGPIIMAQIENEYGPVEWEIGAPGKAYTKWAAQMAVGLKTGVPWIMCKQEDAPDPVIDTCNGFYCEGFRPNKPYKPKMWTEVWTGWYTKFGGPIPQRPAEDIAFSVARFVQNNGSFFNYYMYHGGTNFGRTSSGLFIATSYDYDAPLDEYGLLNEPKYGHLRDLHKAIKLSEPALVSSYAAVTSLGSNQEAHVYRSKSGACAAFLSNYDSRYSVKVTFQNRPYNLPPWSISILPDCKTAVYNTAQVNSQS--SSIKMTPAGGGLSWQSYNEETPTALTANGLWEQKNVTRDSSDYLWYMTNVNIASNEGFLKNGKDPYLTVMSAGHVLHVFVNGKLSGTVYGTLDNPKLTYSGNVKLRAGINKISLLSVSVGLPNVGVHYDTWNAGVLGPVTLSGLNEGSRNLAKQKWSYKVGLKGESLSLH-SLSGSSSVEWVRGSLMAQKQPLTWYKATFNAPGGNDPLALDMASMGKGQIWINGEGVGRHWPGYIAQGDCSKCSYAGTFNEKKCQTNCGQPSQRWYHVPRSWLKPSGNLLVVFEEWGGNPTGI-SLVRRSRS |
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General information:
TITO was launched using:
| RESULT:
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Template: 3W5F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -397336 for 3890 contacts (-102.1/contact) +
2D Compatibility (PS) -54043 + (NN) 18647 + (LL) 464
1D Compatibility (HY) -5600 + (ID) 5050
Total energy: -442918.0 ( -113.86 by residue)
QMean score : 0.065
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