Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKKWKRDHLGMVMGILNVTPDSFSDGGKYMQVEEAVARALQMAEDGAAIIDVGGISTRPGFSEVTPDEELARIIPVIKAV--RTKLPDIWISVDSWRAEVAEQAILAGADMINDQWGAKKEPKIAEVAAKYDVPICLMHNRENAQYDNFLEDVKKDLLESIAIAKAASVPDEHIILDPGFGFVKTPAQNLEVLRRIDEIVALGYEVLLGTSRKSTIGLVLGTTPGDRMEGTGATTVYGFSKGCTITRVHDVLPIARMVRMTDAITGKLDITNL
3H2N Chain:A ((41-294))
----------LIMGILNVTPDSF---GSYNEVDAAVRHAKEMRDEGAHIIDIGGESTR-----VSVEEEIKRVVPMIQAVSKEVKLP---ISIDTYKAEVAKQAIEAGAHIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPVLLGTSRKSFIGHVLDLPVEERLEGTGATVCLGIEKGCEFVRVHDVKEMSRMAKMMDAMIGK------
General information:
TITO was launched using:
RESULT:
Template:
3H2N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139052 for 2087 contacts (-66.6/contact) +
2D Compatibility (PS) -27205 + (NN) -18279 + (LL) 952
1D Compatibility (HY) -26400 + (ID) 7400
Total energy: -217384.0 ( -104.16 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_3H2N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3H2N-query.scw
PDB file :
Tito_Scwrl_3H2N.pdb
: