Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKKTSLACSECGSRNYTVNVSGTQKETRLEVKKFCRHCNKHTLHRETK
1VK6 Chain:A ((105-120))
------------------------------RSHKYCGYCGHEMYPS---
General information:
TITO was launched using:
RESULT:
Template:
1VK6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1668 for 50 contacts (33.4/contact) +
2D Compatibility (PS) -1537 + (NN) 1186 + (LL) 1888
1D Compatibility (HY) -1200 + (ID) 150
Total energy: 1855.0 ( 37.10 by residue)
QMean score : 0.256
(partial model without unconserved sides chains):
PDB file :
Tito_1VK6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VK6-query.scw
PDB file :
Tito_Scwrl_1VK6.pdb
: