Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LRKLDFSYNNANYNAEFLMKILTTLKDITKVEQFTIEIIDAVPNDQEQFKEEKGLFSKEVFDFNNLVKESHGIKIDFKEITNILKQCRTVWELSMLVVTSENELNDSGKVLCEVELIEGDLFAILYSEDFNIDLFLEKFSTDEITIEG
3VO8 Chain:A ((172-253))
-----------------------------------LDIVDKSTPMMEAFKEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIMSNQGSAL-MGIGVSSGENRAVEAAKKAISSPLLE------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3VO8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1496 for 402 contacts (-3.7/contact) +
2D Compatibility (PS) -8527 + (NN) -1428 + (LL) 5136
1D Compatibility (HY) -5200 + (ID) 900
Total energy: -12415.0 ( -30.88 by residue)
QMean score : 0.211
(partial model without unconserved sides chains):
PDB file :
Tito_3VO8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VO8-query.scw
PDB file :
Tito_Scwrl_3VO8.pdb
: