Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLDKKIISALSYFSLFFAPVITPAIIWCTTKDKEIRHHVKWALLTQATFVAGIVVMILLYNNVPFSTNSADTINFLALATVFFIVFLNVSI----LIFNLIRGITRIVKHSDDNWARC
1HIW Chain:A ((8-122))
VLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLET---SEGCRQILGQLQPSLQTGSEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKKAQQAAAD
General information:
TITO was launched using:
RESULT:
Template:
1HIW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114745 for 731 contacts (-157.0/contact) +
2D Compatibility (PS) -11206 + (NN) -735 + (LL) 376
1D Compatibility (HY) 1600 + (ID) 650
Total energy: -125360.0 ( -171.49 by residue)
QMean score : 0.260
(partial model without unconserved sides chains):
PDB file :
Tito_1HIW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HIW-query.scw
PDB file :
Tito_Scwrl_1HIW.pdb
: