Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKLLIVDDAMFMRTMIKNIVKDSDFEVVAEAENGLEAVKKYDEVKPDIVTLDITMPEMDGLEALAQIMAKD--PSAKVIMCSAMGQQGMVVDAIKKGAKDFIVKPFQADRVLEALEKAAK
3FFX Chain:A ((5-121))
-LKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWRMPNMDGLELLKTIRADGAMSALPVLMVTAHAKKENIIAAAQAGASGYVVKPFTAATLEEKLNK---
General information:
TITO was launched using:
RESULT:
Template:
3FFX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64295 for 894 contacts (-71.9/contact) +
2D Compatibility (PS) -12648 + (NN) -9860 + (LL) 560
1D Compatibility (HY) -10000 + (ID) 2200
Total energy: -98443.0 ( -110.12 by residue)
QMean score : 0.602
(partial model without unconserved sides chains):
PDB file :
Tito_3FFX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FFX-query.scw
PDB file :
Tito_Scwrl_3FFX.pdb
: