Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIAIGNDHVGIELKPVIVAYLQDLGHEVDDF-----GAFSNERTDYPEYGKKVAESVAAGKSDLGILICGSGVGISIAANKVNGIRAVVCSEPYSAKLSREHNNTNILAFGSRVVGAELAKMIVQNWLDAEFEG-GRHAKRVEMIARIEDEND
3K8C Chain:A ((24-169))
-RVAIGTDHPAFAIHENLILYVKEAG---DEFVPVYCGPKTAESVDYPDFASRVAEMVARKEVEFGVLACGSGIGMSIAANKVPGVRAALCHDHYTAAMSRIHNDANIVCVGERTTGVEVIREIIITFLQTPFSGEERHVRRIEKIRAIE----
General information:
TITO was launched using:
RESULT:
Template:
3K8C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103708 for 1160 contacts (-89.4/contact) +
2D Compatibility (PS) -15136 + (NN) -5606 + (LL) 420
1D Compatibility (HY) -11200 + (ID) 3000
Total energy: -138230.0 ( -119.16 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_3K8C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3K8C-query.scw
PDB file :
Tito_Scwrl_3K8C.pdb
: