Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPVGIIIGTHGEAARELLKSTEMIIGKQDNVEFITFVPGENTDTLITKYKEKLDKLDTSEGVIFMVDLFGGSPYNASSQIALP-----EDNMDVVTGVNIPMLLETLSMRAA-SNQKDLVETALTAGSGGVKSLKQSLPKIETEVGEDDL
3IPR Chain:A ((1-137))
-MLGIVIATHGALSDGAKDAATVIMGATENIETVNLNSGDDVQALGGQIKTAIENVQQGDGVLVMVDLLSASPYNQAVLVINELEPALQKKIFVVSGTNLPMVLEAINHQLLGTPIAEAAQAIVAQGKESVQAWDISM------------
General information:
TITO was launched using:
RESULT:
Template:
3IPR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66583 for 1010 contacts (-65.9/contact) +
2D Compatibility (PS) -14884 + (NN) -8372 + (LL) 744
1D Compatibility (HY) -10000 + (ID) 1700
Total energy: -100795.0 ( -99.80 by residue)
QMean score : 0.602
(partial model without unconserved sides chains):
PDB file :
Tito_3IPR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IPR-query.scw
PDB file :
Tito_Scwrl_3IPR.pdb
: