Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKYRFLKFNINAGSVTLLVMFSSFFILSVILSTLLSMTWEFYAILSALVIVCFFNFKKFFPGEVAVS--EEAFYYKSKAYPYSKYIIECDAKLIRFK---SPSARAIPYYRIVIINKDTRAEKLIKVHNAARRYKGANTQMQVEMEELRDQLKQYQS-----
2LIO Chain:A ((1-136))
MKK-------------------EKIHLEYLLNATSKNILWSAISTPTGL--------EDWFADKVVSDDKTVTFCWGKTEQRQAGIVAIRAYSFIRFHWLDDENERDYFEIKMSYNELTGDYVLEITDFSEADEADDLKELWDSQVSKLRRTCGFLEHHHHHH
General information:
TITO was launched using:
RESULT:
Template:
2LIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36592 for 773 contacts (-47.3/contact) +
2D Compatibility (PS) -13494 + (NN) 15 + (LL) 2772
1D Compatibility (HY) -4000 + (ID) 850
Total energy: -52149.0 ( -67.46 by residue)
QMean score : 0.255
(partial model without unconserved sides chains):
PDB file :
Tito_2LIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LIO-query.scw
PDB file :
Tito_Scwrl_2LIO.pdb
: