Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDNNQKDLNQVIRQLKEKGIVVEKTKSRKDIWKSVSSKAMPNMTLRLQ
2PJU Chain:A ((137-175))
---TEEDARGQINELKANGTEAVVGAGL--ITDLAEEAGMTGIF----
General information:
TITO was launched using:
RESULT:
Template:
2PJU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 6525 for 226 contacts (28.9/contact) +
2D Compatibility (PS) -4119 + (NN) -1377 + (LL) 580
1D Compatibility (HY) 800 + (ID) 350
Total energy: 2059.0 ( 9.11 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_2PJU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PJU-query.scw
PDB file :
Tito_Scwrl_2PJU.pdb
: