Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTFWQDMMNFFSYDNLMYWL--SEYRNLGPLLAFLLPFIEAFLPFLPF-IVFVVVNVNAYGLLIGFLISVIAAIAGSLCVFLLARKFGQTRFLRFISGHKQIKRVMEWIDRHGFS-------PIFILLVMPFTPSSAVNIVAGLSKIKVYQFILALVG------GKLIKVFAISYIGYDFVDLIHQPLKLAILAVSVVILWFVGKRLEHWMSGKNLK------------------------------------------
4HQO Chain:A ((6-262))
DEVKYSEEVCNEQVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELIRLGSGQSID--KRQALSKVTELRKTYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNSKYRALEVANKLKQRNVRLAVIGIGQGINHQFNRLIAGCRPREPNCKFYSYADWNEAVALIKPFIAKVCTEVERVANCGPWDPWTACSVTCGRGTHSRSRPSLHEKCTTHMVSECEEGECPHHH
General information:
TITO was launched using:
RESULT:
Template:
4HQO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -213306 for 1454 contacts (-146.7/contact) +
2D Compatibility (PS) -20924 + (NN) -3411 + (LL) 232
1D Compatibility (HY) -2000 + (ID) 1200
Total energy: -240609.0 ( -165.48 by residue)
QMean score : 0.225
(partial model without unconserved sides chains):
PDB file :
Tito_4HQO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HQO-query.scw
PDB file :
Tito_Scwrl_4HQO.pdb
: