Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MINQKKIAGEKACEWIKDGMVVGLGTGSTVYYTIEKLGEMVNNGL--HITGVATSEETNKQAQNLGIPLKSLNDVTE-IDITIDGADEIDTDFQG-IKGGGGALLREKMVASASLKNIWVVSEEKLVRN-LGKF-PLPLEVIPFGWKQVERKLE-----KEH-IQTNLRKQSSG--------EVYVTNNGNYILDI-VNQTFTDAEMWQEKLAQIPGIVEHGLFLHYVDIIICAKANGEIELIKK
4NML Chain:A ((19-251))
--------------YVRSGMKVGLGTGTTAKFVVERIGQRMQEGSLKDLLCVPTSEATRKQAESLGIPLTTLDGIADCLDVAIDGADEILPPTLGLVKGRGGALLREKMIAAAAKTFIVAADETKLVSNGIGSTGALPVEVVVFSGSHTKRLLSALPSVKRHGGRAEFRKRAGAAQEDIREEDRFVTDNGNYIVDLYFTETVPDLHEMDKELKSIPGVVETGFFLDLASVCLIGKADGSV-----
General information:
TITO was launched using:
RESULT:
Template:
4NML.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99766 for 1634 contacts (-61.1/contact) +
2D Compatibility (PS) -22723 + (NN) -9649 + (LL) 1840
1D Compatibility (HY) -17200 + (ID) 4400
Total energy: -151898.0 ( -92.96 by residue)
QMean score : 0.556
(partial model without unconserved sides chains):
PDB file :
Tito_4NML.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NML-query.scw
PDB file :
Tito_Scwrl_4NML.pdb
: