Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKEVMIKATGLEKSFKKTEVLKGVDFEVKHGEIFALLGSNGAGKTTTIQILATLLKADNGNAHISGFDVKTEP--EKVRKHISLTGQFAAVDGLLTGRENILLIAKLRGEKNPAQTAD----DLLARFGLEKAADRRADTYSGGMTRRLDIAMSLVGSPDVIFLDEPTTGLDPEGRMEVWKTIKTLSDGGTTILLTTQYLDEAEQLADRIAILHGGTIIANGTLDELKKLFPPAEVEYIEKQPSLEEIFLAIINGKEEVK
4U02 Chain:A ((2-225))
--EPIIRIRNLHKWFGPLHVLKGIHLEVAPGEKLVIIGPSGSGKSTLIRTINRLEDFQEGEVVVDGLSVKDDRALREIRREVGMVFQQFNLFPHMTVLENVTL-APMRVRRWPREKAEKKALELLERVGILDQARKYPAQLSGGQQQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLDVMRDLAQGGMTMVVVTHEMGFAREVADRVVFMDGGQIVEEGRPEEI---------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4U02.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113325 for 1792 contacts (-63.2/contact) +
2D Compatibility (PS) -23451 + (NN) -8471 + (LL) 3316
1D Compatibility (HY) -16400 + (ID) 3550
Total energy: -161881.0 ( -90.34 by residue)
QMean score : 0.617
(partial model without unconserved sides chains):
PDB file :
Tito_4U02.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4U02-query.scw
PDB file :
Tito_Scwrl_4U02.pdb
: