Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKQAIGFIDSGVGGLTVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGVIQPGSRAALKATRNNKIGVLGTLGTVESMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKS-AIAKKVVAESLLPLKSTKIDTVILGCTHYPLLKPIIENFMGDGVAVINSGEETASEVSALLDYHNLLDATDEEIEHRFFTTGSTQIFKDIAKDWLNMPDMTVEHIKLGK
2JFQ Chain:A ((21-284))
MNKPIGVIDSGVGGLTVAKEIMRQLPNETIYYLGDIGRCPYGPRPGEQVKQYTVEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSISVIGVIEPGARTAIMTTRNQNVLVLGTEGTIKSEAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYSDPTITSIVIHQTLKRWRNSESDTVILGCTHYPLLYKPIYDYFGGKKTVISSGLETAREVSALLTFSNEHASYTEHPDHRFFATGDTTHITNIIKEWLNL-SVNVERISV--
General information:
TITO was launched using:
RESULT:
Template:
2JFQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -231460 for 2441 contacts (-94.8/contact) +
2D Compatibility (PS) -28007 + (NN) -6651 + (LL) -248
1D Compatibility (HY) -28800 + (ID) 6700
Total energy: -301866.0 ( -123.66 by residue)
QMean score : 0.608
(partial model without unconserved sides chains):
PDB file :
Tito_2JFQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JFQ-query.scw
PDB file :
Tito_Scwrl_2JFQ.pdb
: