Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MADKRQSNNRRIKQNLVEGSRSQQNTKRKKTNLVLNVLIIVVSLLIIGSLYFVLFKTESDPAQQENKTASSTAKKEDAAKSSEKKKDSSDDKTTETTESDDPNVAKVITKDWKPIGTEQTGDHVNSYSSTSVDWQEKRKAFSVATDIPVSNTSLWFVEQGADPATQAIGTLSTKENPDK-----AYRVYITW----VDGEGWQPTKVEELKTNDKR |
3TNB Chain:A ((227-282)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------YLLEHGADPKKIVIGHMCDNTDPDYHRKTLAYGVYIAFDHFGIQGMVGAPTDEERVRT---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TNB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 1004 for 220 contacts (4.6/contact) +
2D Compatibility (PS) -4757 + (NN) 835 + (LL) 8892
1D Compatibility (HY) 2400 + (ID) 50
Total energy: 8324.0 ( 37.84 by residue)
QMean score : -0.110
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