Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VNDIIHDYLLKNIPKSSPFFKELEAYAKENEVPI--MEPDSLYCLLQILDIQKPKRILELGTAIGYSALKMADKLPDA-EIITVERDEERYEQAIHNIQRYGASDRVKVLLTDAIEGAEEI--LAHGPFDAIFIDAAKAQYEKFFHIYTVSLAENG-VIYSDNVLFKGLALDMTPEKQRKLRVARKMRHFNDFLVTHPDFETTTIPLGDGLSISKRKKTGGVS
3DUW Chain:A ((10-205))
VDQYVSDVL---IPKDSTLEEVLQVNAAAN-LPAHDVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQNNPAYFE-WALKLSRPGTVIIGDNVVREGEVIDNTSNDPR----VQGIRRFYELIAAEPRVSATAL------------------
General information:
TITO was launched using:
RESULT:
Template:
3DUW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84039 for 1484 contacts (-56.6/contact) +
2D Compatibility (PS) -20724 + (NN) -12797 + (LL) 1104
1D Compatibility (HY) -13200 + (ID) 3150
Total energy: -132806.0 ( -89.49 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_3DUW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DUW-query.scw
PDB file :
Tito_Scwrl_3DUW.pdb
: