Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQVTFKHNPVTLVGTERKVGDKAPNFTVVNRDLEEVTLHDYDGKVRLISVVPSIDTSVCSTQTRKFNEEASNLDNTVVLTISVDLPFAQKKWCAAEGLPNAITLSDHRDLSFGEAYGVIMKE--LR-LLARSVFVVNAVGEIVYTEVVPEGSDHPNYEAAIEAAKKA
3HVV Chain:A ((5-167))
---VHFQGNPVTVANSIPQAGSKAQTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVSAASVRKFNQLATEIDNTVVLCISADLPFAQSRFCGAEGLNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNVIFSQLVDEITTEPDYEAALAVLK--
General information:
TITO was launched using:
RESULT:
Template:
3HVV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78996 for 1291 contacts (-61.2/contact) +
2D Compatibility (PS) -17191 + (NN) -2240 + (LL) 588
1D Compatibility (HY) -15200 + (ID) 3700
Total energy: -116739.0 ( -90.43 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_3HVV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HVV-query.scw
PDB file :
Tito_Scwrl_3HVV.pdb
: