Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VENTIVIKLGGVASDN---LTEGFFRQITEWQAANKKIVLVHGGGHYITKMMEALAIPVETKNGLRVTNKATLEVTKMVLIGQVQPAITTAFQKRNISVIGLNASDTGLLEADRLSDTDLGLVGKITKVKTNLIEQLLSENIITVIAPLGINSEHDWLNVNADTAACEVASALHAEALYLLTDVPGVKNGSEIIGEIATAEIEKLQSTGVIKGGMIPKLASAAFAAENGVGQVIITDSLNNSGTKIKNKVAIG
3T7B Chain:A ((5-242))
--NPLVIKLGGVLLDSEEALERLFTALVTYREKHERPLVIMHGGGCLVDELMKRLALPVVKKNGLRVTPADQIDIITGALAGTANKTLLAWAVKHQINAVGLCLADGNTVTVTLL-DAELGHVGKAQPGSAALVQTLLAAGYMPIISSIGITVEGQLMNVNADQAATALAATLGAD-LILLSDVSGILD--QRIAEMTAQKAEQLIAQGIITDGMVVKV-NAALDAARSLGRPVDIASWRHS-----------
General information:
TITO was launched using:
RESULT:
Template:
3T7B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151022 for 1916 contacts (-78.8/contact) +
2D Compatibility (PS) -25423 + (NN) -9697 + (LL) 920
1D Compatibility (HY) -19200 + (ID) 4050
Total energy: -208472.0 ( -108.81 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_3T7B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3T7B-query.scw
PDB file :
Tito_Scwrl_3T7B.pdb
: