Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKTLTNKLAEKEHAAVVTYIMGG----DGGLDNLEEQLLFLEKSGVSAIEIGIPFSDPVADGPIIQLAGLRALKEQVSLEAILN--KLAMSKVQIPLIIMSYINPIFHLGIPKFVELVQKTPVKGLIIPDLPYEHQKLITPELQGTDIALIPLVSLTSPKERLEEIAKQAEGFIYAVTVNGTTGVRSEFDAHIDSHLAYLKSISPVPVLAGFGVSSIEHVEKFAHVCDGVIIGSKVVQMLHEEKTAELGAFLQKAAEVRIKN
1UJP Chain:A ((15-253))
-------------RAALIPYLTAGFPSREGFLQAVEEVLPYAD-----LLEIGLPYSD----GPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFVYAVSV------------EVKDLVRRIKARTALPVAVGFGVSG-KATAAQAAVADGVVVGSALVRALEEGRS-----------------
General information:
TITO was launched using:
RESULT:
Template:
1UJP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -212828 for 1670 contacts (-127.4/contact) +
2D Compatibility (PS) -22515 + (NN) -12840 + (LL) 3540
1D Compatibility (HY) -14800 + (ID) 3450
Total energy: -262893.0 ( -157.42 by residue)
QMean score : 0.632
(partial model without unconserved sides chains):
PDB file :
Tito_1UJP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UJP-query.scw
PDB file :
Tito_Scwrl_1UJP.pdb
: