Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILLIDNYDSFTFNLEQYLAEFSEVVVKRNDAADLIKIAALADGIVLSPGPGKPSDAGLLEEVVAKFAKEK-PLLGICLGHQAIGEVFGGEVKRAAKIRHGKVSTMRQTAGAIFANLPEEMPVMRYHSLIVDKNTLPDVLEVLAIATDDSEVMAMKVKDYPVYGLQFHPE-SIGTNDGKQMMENFIHIVEGARENGNLTTKSI
1KEE Chain:B ((218-380))
------------------------IVPAQTSAEDVLKMNP--DGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGI-LGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVV------MITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKT--------
General information:
TITO was launched using:
RESULT:
Template:
1KEE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65317 for 1255 contacts (-52.0/contact) +
2D Compatibility (PS) -16715 + (NN) -2400 + (LL) 3112
1D Compatibility (HY) -5600 + (ID) 2400
Total energy: -89320.0 ( -71.17 by residue)
QMean score : 0.412
(partial model without unconserved sides chains):
PDB file :
Tito_1KEE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KEE-query.scw
PDB file :
Tito_Scwrl_1KEE.pdb
: