Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------MKKILIGGIRLYQKYISRFTPATC-----RFYPTCSAYGIEAIQTHGALKGSYLAIRRI------SKCHPFHKGGLDFVPPKKDKNADSEHSCKVHHHH---
2KCK Chain:A ((1-112))
MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHHH
General information:
TITO was launched using:
RESULT:
Template:
2KCK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10283 for 569 contacts (-18.1/contact) +
2D Compatibility (PS) -8383 + (NN) 3772 + (LL) 0
1D Compatibility (HY) -2800 + (ID) 700
Total energy: -18394.0 ( -32.33 by residue)
QMean score : -0.082
(partial model without unconserved sides chains):
PDB file :
Tito_2KCK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KCK-query.scw
PDB file :
Tito_Scwrl_2KCK.pdb
: