Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEGVENKVIVLAGMIGAGKSSYT----------ELIANELGTKAFYESIKD-------NRILEMFYDDPKRWAFALQIYFLNTRFR----SIKAALTDQNN---VLDRSIYEDA-LFTQINFEEGNISEPEMDTYLDLLDNMMEELAYMPKKAPDLLIYLRGSLDTVLSRIALRGRPYEQIDDNPGL-LEYYKHLHSRYDSWFASYDKSETLVINIDEIDINKPNDADYVMQLIHEKLKR
4KCG Chain:A ((40-246))
----RIKKISIEGNIAAGKSTFVNILKQLSEDWEVVPEPVARWSN------TMEQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESESMNETEWTIYQDWHDWMNNQFG--QSLELDGIIYLQATPETCLHRIYLRGRNEEQ-----GIPLEYLEKLHYKHESWLL----HRTLKTNFD-----------------------
General information:
TITO was launched using:
RESULT:
Template:
4KCG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78697 for 1204 contacts (-65.4/contact) +
2D Compatibility (PS) -18115 + (NN) -6294 + (LL) 2612
1D Compatibility (HY) -13600 + (ID) 3050
Total energy: -117144.0 ( -97.30 by residue)
QMean score : 0.374
(partial model without unconserved sides chains):
PDB file :
Tito_4KCG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KCG-query.scw
PDB file :
Tito_Scwrl_4KCG.pdb
: