Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIAIFASGSGSNFQALVDDEF---IKPYVKLLVCDKPNAYVLERANKHDIPVFLFEAKNYPDKEAFETEILLELRRLEIDLLVLAGYMRLIGPTLLAEFPEQIVNLHPSLLPEFKGKDAIGQAIQANVSGTGVTAHFVDAGMDTGPIIDQVKVTIETAETTDTLAEKIHQVEHIFYPKVIR----GLIQNGGND
1RBM Chain:A ((3-194))
--VAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQLGEN-
General information:
TITO was launched using:
RESULT:
Template:
1RBM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135921 for 1486 contacts (-91.5/contact) +
2D Compatibility (PS) -20536 + (NN) -13433 + (LL) 52
1D Compatibility (HY) -15600 + (ID) 3250
Total energy: -188688.0 ( -126.98 by residue)
QMean score : 0.500
(partial model without unconserved sides chains):
PDB file :
Tito_1RBM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RBM-query.scw
PDB file :
Tito_Scwrl_1RBM.pdb
: