Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTNELVYEGKAKRLFKTEEAGVLRVAYKDDATALNGVRKESFAGKGELNNQITSLIFSHLAEAGIESHFIRAISETEQLVKEVSIIPLEVVVRNVMAGSLAKRLGKEEGEQIPNAIVEFYYKDDALDDPFINDDHVLYLEVATTSEMDTIRQAARSINKVLQELFNQMNITLIDFKLEFGRDAAGEILLADEISPDTCRLWDKETNQKLDKDVFRRNIGNLTDVYTEVLNRLKQVQN
4O86 Chain:A ((12-231))
----------AKKMIPIDDDKLI-MEFKDDATAFDGTKKARFKGKGWLNAQLSVIFFKLLEEHGIKTHFIGVAGGNRLIVEKLDMYPLEVVVRNVVAGSLKKRLPLPEGYELPEPIVELYYKNDELHDPMINYYHAKVLGI-SLDEIKKIEEIALKVNEILKDYLAKKGIILVDFKLEFGKDKNGDIVLADEISPDTCRFWDAKTKRSLDKDVFRFDKGDLIEAYKEIYERI-----
General information:
TITO was launched using:
RESULT:
Template:
4O86.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81438 for 1682 contacts (-48.4/contact) +
2D Compatibility (PS) -22815 + (NN) -1935 + (LL) 1384
1D Compatibility (HY) -25200 + (ID) 5100
Total energy: -135104.0 ( -80.32 by residue)
QMean score : 0.421
(partial model without unconserved sides chains):
PDB file :
Tito_4O86.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4O86-query.scw
PDB file :
Tito_Scwrl_4O86.pdb
: