Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LDKKFLLTNSTIGIIGGGQLGRMLALAAKAMGYRIIVLDPTADCP---AAQVSDEQIIADYDDKVALRELSEKADVVTYEFENIDYDALKMTQNLVSVPQGSELLSITQDRILEKAYLESANINIAPYAVIVEQDEIENEIKSIGYPAVLKTAQGGYDGKGQVVIHDARDIETAARLLRYG--SCVLEAWIPFEKEISVVVARNLDGQIETFPVAENVHVNNILHTTMVPADVAADVYEEAEEIARKLAEVLQLCGVLAVEMFVTKSGAIYVNELAPRPHNSGHFTIEACSISQFTQHIRAIVGLPLVKPELLKPAVMINILGQHVDAVNKQMVNYPHWFVHYYGKKEAKINRKMGHVTV-LADEPKAVIQDLEETQIWK |
| 4MAM Chain:A ((3-346)) | -----------IGIIGAGQLARMLSLAGTPLGLEFHCLGKNGDCAEEVVKTVTDIEL-TKVNDVVAW---AKQFDVITFENENISHELIKAINHEVSVYPSAKAIAISQDRLLEKSFMQDHGIATAKFVNIDSLAKLQSAVDDHGLPAILKTRRFGYDGKGQFVIRSQEDITKAWDVLKDAPDGLIYEAFVDFDYEVSQICTADLKGNIAFYPLARNTHKQGIIVESEAPFENVV-LAEKAQQIAKILVKEFAYVGTLAIEFFV-KGDELIVNEIAPRVHNSGHWSIDGAVTSQFENHVRAIAGL-ILGDTTSRKTVMLNCIGGM--PATKDLAALDRVKIHSY-NKEPRKGRKVGHLNLNLNDE--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MAM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -196311 for 2875 contacts (-68.3/contact) +
2D Compatibility (PS) -38121 + (NN) -17858 + (LL) 2560
1D Compatibility (HY) -27200 + (ID) 6250
Total energy: -283180.0 ( -98.50 by residue)
QMean score : 0.490
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