Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYY--GTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKKEIEMMASYDYAVVNDVVANAVQKIKGIVETEHLKTERVIHRYKKMLEGLQ
1Z8F Chain:A ((23-198))
----GRVVVLSGPSAVGKSTVVRC-LRERIPNLHFSVSATTRCPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGCETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAEL--------------------------
General information:
TITO was launched using:
RESULT:
Template:
1Z8F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66759 for 1218 contacts (-54.8/contact) +
2D Compatibility (PS) -19261 + (NN) -12055 + (LL) 3116
1D Compatibility (HY) -12800 + (ID) 3500
Total energy: -111259.0 ( -91.35 by residue)
QMean score : 0.636
(partial model without unconserved sides chains):
PDB file :
Tito_1Z8F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Z8F-query.scw
PDB file :
Tito_Scwrl_1Z8F.pdb
: