Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LLYSLLANRAFLRLLFFGNLLGAIYGYIWYLPQLQMTEPRFWLFVPDSPTAILFFTLALVAFLGKKHWPLMEALGFVCLVKYGLWAVGMNIFYMVDQGVLVWGSVVLILTHGFMAVEGILYAPFYRFRIGHFMIAAVWVFH-NDVIDYVFGQMPIYMGLEKYLPEIGYATFWLTVLVLWFVYDKTIKNKHLTLEFPHDE---
4B9G Chain:A ((16-161))
---DIDSAVRIIPVNYDSDP-----KLNSQLYTVEMTIPAGVSAVKIVPTDSLTSSGQQIGKLVNVNNP------------------DQNMNYYIRKDS----------------------------GAGKFMAGQKGSFSVKENTSYTF--SAIYTGGEYPNSGYSSGTYAGHLTVSFYSNDNKQRTEIATKNFPVSTTIS
General information:
TITO was launched using:
RESULT:
Template:
4B9G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133446 for 1033 contacts (-129.2/contact) +
2D Compatibility (PS) -14761 + (NN) 6046 + (LL) 5600
1D Compatibility (HY) 4400 + (ID) 1400
Total energy: -133561.0 ( -129.29 by residue)
QMean score : 0.070
(partial model without unconserved sides chains):
PDB file :
Tito_4B9G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4B9G-query.scw
PDB file :
Tito_Scwrl_4B9G.pdb
: