Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLEKVNEAVAKIRESYTGTPKIGLILGSGLGVLADEVNQPIKLSYSEIPHFPVSTVEGHAGQFVFGELENKEVVAMQGRFHFYEGYSMQDVTFPVRVMKELGVEVLIVTNAAGGVNELYSAGDLMLISDHIN---FTGTSPLIGPNDEHFGPRFPDMSEAYNLALRVDARLIAQEL--NLTIREGVYAGFSGPTYETPAEIQMMRTLGADAVGMSTVPEVIIANHAGLRVLGISCITNMAAGILDQ-PLSHTEVIETTDQVRSTFLQYVKAIVAKIS
1V48 Chain:A ((25-282))
--------------------PQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPES------GRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKV--IMDYE-------------AAQKLEQFVSLLMASI-
General information:
TITO was launched using:
RESULT:
Template:
1V48.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -180246 for 1911 contacts (-94.3/contact) +
2D Compatibility (PS) -24351 + (NN) -8224 + (LL) 2852
1D Compatibility (HY) -24400 + (ID) 6150
Total energy: -240519.0 ( -125.86 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_1V48.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V48-query.scw
PDB file :
Tito_Scwrl_1V48.pdb
: