Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEAIKVESLTKNYHKKRAIENVDLSVNEGELYGFIGPNGAGKSTTIKVLLNFIYATSGGATILGKDVVKDSAEIKKM---VGYVPSEVRYYPQMTANDIIHYAAKFHHIENATQKMNKY-YEMFSIDPKKRFG----------EMSLGNKKKVAIVAGLITEPQLFILDEPTNGLDPLMQHYLFKEMTERNKEGMTIFLSSHNLREVQEYCTRAAFIRNGNIIAVEDIANQQMTGKVIALKGTNLPLEKLTNAGARIIEKEMGKARLIFDDDIKTILPLLQEKEITDLTITNQELEDKFMTLYEGGEIK |
4YMS Chain:J ((2-215)) | ---IFVNDVYKNFGSLEVLKGVTLKVNKGEVVVIIGPSGSGKSTLLRCINLLEEPTKGEVFIDGVKINNGKVNINKVRQKVGMVFQHFNLFPHLTAIENITLAPV------KVKKMNKKEAEELAVDLLAKVGLLDKKDQYPIKLSGGQKQRLAIARALAMQPEVMLFDEPTSALDPEMVKEVLNVMKQLANEGMTMVVVTHEMGFAREVGDRVIFMDDGVIV-------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4YMS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -103997 for 1565 contacts (-66.5/contact) +
2D Compatibility (PS) -21001 + (NN) -4633 + (LL) 7732
1D Compatibility (HY) -16000 + (ID) 3250
Total energy: -141149.0 ( -90.19 by residue)
QMean score : 0.387
|
|
|