Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTIAKMIDHTALKPDTTKEQILTLTKEAREY--GFASVCVNPTWVKLSAEQL---AGAESVVCTVIGFPLGANTPEVKAFEVKDAIQNGAKEVDMVINIGALKDKDDELVERDI--RAVVDVAKGKALVKVIIETCLLTDEEKVR-ACEIAVKAGTDFVKTSTGFSTGGATAEDIALMRKT-----VGPNIGVKASGGVRTKEDVEKMIEAGATRIGASAGVAIVSGEKPAKPDNY
1JCJ Chain:A ((14-226))
----KLMDLTTLNDDDTDEKVIALCHQAKTPVGNTAAICIYPRFIPIARKTLKEQGTPEIRIATVTNFPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALM-AGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTVGFLPAGGVRTAEDAQKYLAIADELFGA------------------
General information:
TITO was launched using:
RESULT:
Template:
1JCJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84611 for 1629 contacts (-51.9/contact) +
2D Compatibility (PS) -22889 + (NN) -14816 + (LL) 1040
1D Compatibility (HY) -12000 + (ID) 3700
Total energy: -136976.0 ( -84.09 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_1JCJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JCJ-query.scw
PDB file :
Tito_Scwrl_1JCJ.pdb
: