Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGQLFNLPQVEDINYIQTVRAVRKFFKDYLMLRVMAGSRKLPTMTTTYKLTPPNFSNEFHSKVEDAAIHNVDNVHAAQE-AVKKYDAIL------NQLEHIHRKI-LFEKFIHNLQDITIMLDIPYEERQYKREKRKAVIELATTLGIEVLN
4NQY Chain:A ((296-381))
-----------------------------------------------------------------ACPHNVDNVKQAREVAGKPIDQVFIGSCTNGRLEDLRMAIKIIEKHGGIADDVRVVV-TPASREEYLKALKEGIIEKFLKYGCVVTN
General information:
TITO was launched using:
RESULT:
Template:
4NQY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27420 for 428 contacts (-64.1/contact) +
2D Compatibility (PS) -8319 + (NN) -2358 + (LL) 4616
1D Compatibility (HY) -4400 + (ID) 1250
Total energy: -39131.0 ( -91.43 by residue)
QMean score : 0.430
(partial model without unconserved sides chains):
PDB file :
Tito_4NQY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NQY-query.scw
PDB file :
Tito_Scwrl_4NQY.pdb
: