Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LDEKTKIYDITIIGGGPVGLFAAFYAGMRN-ASVKIIESLPQLGGQLSTLYPEKYIYDIPGYPSVRAQELVNNLIQQMKPFDPTVALEEAVQSVEKQVDGTFEIITKKDTHYS-KAIIITAGNGAFEPRRLDLPEAEQYEGTNIHYF-INDLSRFSGRRVAVCGGGDSAVDWALMLEKVASSVAIVHRRNAFRAHEHSVNNLEKSSIAIKTPFIPTEVLGN----GDKLTHITLQEVKGDTTETLEIDDFIINYGFVSSLGPIKNWGLELERNSIVVNSKMETSIPGIYCAGDICTYDGKVKLIATGFGEAPTAVNNAMNFIDPKTRVQPMHSTSLFE |
| 4GCM Chain:A ((7-306)) | -------FDIAIIGAGPAGMTAAVYASRANLKTVMIERGIP--GGQMANT---EEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGD-IKSVEDK--GEYKVINFGNKELTAKAVIIATGA---EYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKND---KIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDV--RDKGLRQIVTATGDGSIAAQSAAEYIE--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GCM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -197080 for 2493 contacts (-79.1/contact) +
2D Compatibility (PS) -31992 + (NN) -11096 + (LL) 2872
1D Compatibility (HY) -18400 + (ID) 4800
Total energy: -260496.0 ( -104.49 by residue)
QMean score : 0.519
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