Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLPKDLLYTEEHEWVKADDGSYVIGITDFAQDQLGDIVFVELPEVGDTVTKGDSIGSIESVKTVSDFYAPVTGKVVAVNETLEDEPELINSNPYDTGWILKLEEVEEADVKALLSSDDYEKVLD
3WDN Chain:A ((5-120))
--------FTEKHEWVTTENGVGTVGISNFAQEALGDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMTFSNPSELDELMSEEAYEKYI-
General information:
TITO was launched using:
RESULT:
Template:
3WDN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37911 for 899 contacts (-42.2/contact) +
2D Compatibility (PS) -12287 + (NN) -3018 + (LL) 480
1D Compatibility (HY) -12400 + (ID) 2300
Total energy: -67436.0 ( -75.01 by residue)
QMean score : 0.671
(partial model without unconserved sides chains):
PDB file :
Tito_3WDN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WDN-query.scw
PDB file :
Tito_Scwrl_3WDN.pdb
: