Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDQIISALIFPCLLVILFARITYNRYVGLLLMVILIAASAKLGYTSSMWLIIIDAFSMTIGFVLATYMLRRLKKSGSDF
1J1D Chain:B ((20-89))
QTEREKKKKILAERRKVLAIDHLN---------EDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN
General information:
TITO was launched using:
RESULT:
Template:
1J1D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14822 for 296 contacts (-50.1/contact) +
2D Compatibility (PS) -7387 + (NN) -3941 + (LL) 1140
1D Compatibility (HY) 3600 + (ID) 350
Total energy: -21760.0 ( -73.51 by residue)
QMean score : -0.151
(partial model without unconserved sides chains):
PDB file :
Tito_1J1D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J1D-query.scw
PDB file :
Tito_Scwrl_1J1D.pdb
: