Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------------MRKVGIFPSMIILFTVGISAVLYPLL--PSEVAVHFGTDFSPDMFMQKWLGLILIPFLMIMFTG-TEYYGKEKVNQESLL--------------EFEYCFRLLLVLLTIIQMSIIVYALGYDIPTGRFSLVTAGAFMFVV----AAYIQYSKKLFKFLTMIGFKKIDAWSRNL----LRKITTVTLNIAGTICFIL-------------ALFMRNDPSYLMLAMLMTMCVIVVGSGVYLNKK
3KJH Chain:A ((1-254))
MKLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPDSCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLILNPKVDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCYCRENSFLGSVVSALFLDKKEAVVMDMGAGIEHLTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRNIKEEKLIKKHLPEDKILGIIPYNELFIELSLKGEEIWQSTNPAFVNLHDIYQKLRLEVG--------
General information:
TITO was launched using:
RESULT:
Template:
3KJH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -202061 for 1367 contacts (-147.8/contact) +
2D Compatibility (PS) -21023 + (NN) -10873 + (LL) 308
1D Compatibility (HY) -2800 + (ID) 1500
Total energy: -237949.0 ( -174.07 by residue)
QMean score : 0.147
(partial model without unconserved sides chains):
PDB file :
Tito_3KJH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KJH-query.scw
PDB file :
Tito_Scwrl_3KJH.pdb
: