Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKEDVIEVEGVVQETLPNAMFNVELENGHKVLATVSGKIRMHYIRILPGDKVTVELSP-YDLTRGRITYRFK
2DGY Chain:A ((21-89))
---PSNQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRK-NIWIKRGDFLIVDPIEEGEKVKAEISFVLC
General information:
TITO was launched using:
RESULT:
Template:
2DGY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16376 for 418 contacts (-39.2/contact) +
2D Compatibility (PS) -7358 + (NN) 674 + (LL) 460
1D Compatibility (HY) -400 + (ID) 750
Total energy: -23750.0 ( -56.82 by residue)
QMean score : 0.445
(partial model without unconserved sides chains):
PDB file :
Tito_2DGY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DGY-query.scw
PDB file :
Tito_Scwrl_2DGY.pdb
: